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Software - iMir


iMir is a modular pipeline for comprehensive analysis of smallRNA-Seq data, comprising specific tools for adapter trimming, quality filtering, differential expression analysis, biological target prediction and other useful options by integrating multiple open source modules and resources in an automated workflow.

Download iMir here 

iMir: An Integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq
Giurato G, De Filippo M.R, Rinaldi A, Hashim A, Nassa G, Ravo M, Rizzo F, Tarallo R, Weisz A.
BMC Bioinformatics. 2013 Dec 13;14:362. doi: 10.1186/1471-2105-14-362. PubMed PMID: 24330401; PubMed Central PMCID: PMC3878829.