iSmaRT - integrative Small RNA Toolkit
iSmaRT (integrative Small RNA Tool-kit) is an an automated pipeline to analyze smallRNA-Seq data comprising a collection of bioinformatics tools and own algorithms, interconnected through a Graphical User Interface (GUI). In addition to performing comprehensive analyses on miRNAs, it implements specific computational modules to analyze piRNAs, predicting novel ones and identifying their RNA targets, allowing comprehensive analyses of small noncoding RNAs in a rapid and user friendly way.
iSmaRT is freely available on the web at ftp://labmedmolge-1.unisa.it (User: iSmart - Password: password)
iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data.
Panero R, Rinaldi A, Memoli D, Nassa G, Ravo M, Rizzo F, Tarallo R, Milanesi L, Weisz A, Giurato G.
Bioinformatics. 2017 Mar 15;33(6):938-940. doi: 10.1093/bioinformatics/btw734. PubMed PMID: 28057684.